PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027217-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 252aa    MW: 27234.6 Da    PI: 9.3455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027217-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-135299254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +++h+ +ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+ +k+L
  WALNUT_00027217-RA 52 CKSHKDAERRRRQRINAHLSTLRSLLPNT-----TKTDKASLLAQVVHRVKEL 99
                        789*************************9.....8************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.37E-1348104No hitNo description
PROSITE profilePS5088815.3075099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-105299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1253103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1353105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00112150215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLPLQSYYGS RSWLERKTEP GQQPSPTVNT MDGGDSMLSS ASMGERRSEE ACKSHKDAER  60
RRRQRINAHL STLRSLLPNT TKTDKASLLA QVVHRVKELR QQVADVPCRE GNGDACGSGS  120
DAVPDPWLLP GESDEATLSY CDGGKKVKAT LCCDDRPGLN VDLARAIKSV RARAVRAEMM  180
TVGGRTRSEV MVQWAGSGTG GDHEIGALKR ALKAVVENRA SNSGVGQGVS RNKRARINGS  240
LTDDNDFLLT GL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885984.15e-98PREDICTED: transcription factor bHLH30-like isoform X2
RefseqXP_015885983.15e-98PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBLW9RXF42e-94W9RXF4_9R
STRINGVIT_18s0001g07410.t019e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-34bHLH family protein